Bioinformatics · Phase 31

Reference Proteome Similarity Pre-screen

Search short peptide candidates against a user-supplied reference proteome and report exact or near matches within a selected substitution limit. This is designed for immunology/vaccine candidate review where short peptides need a deterministic search rather than ordinary long-sequence BLAST heuristics.

Similarity inputs

Query peptides

Reference proteome FASTA

Local interactive limit: 750,000 reference amino acids. The reference set is supplied by you and is not stored.

Maximum substitutions

Maximum hits shown / peptide

Ready for analysis.

Open Peptide Developability Open Epitope Conservancy Open MHC / HLA Prediction

Reference Proteome Similarity Pre-screen

Similarity inputs

Reference similarity summary