Sequence Utilities

Clean DNA, generate reverse complements and RNA, translate all six reading frames, and identify basic start-to-stop ORFs.

DNA / FASTA input

Research-use note: Translation uses the standard genetic code. ORF detection is a lightweight sequence utility, not a gene-prediction or annotation pipeline.

Sequence comparison & translation

Continue with pairwise alignment, sequence differences, six-frame translation and ORF analysis.

Sequence Alignment & Variant Comparison

ORF & Translation Analyzer

Sequence composition & quality

Inspect GC/AT composition, CpG positions, homopolymers and sliding-window complexity.

Open Sequence Composition & Quality Analyzer

Codon usage & optimization

Analyze coding-sequence codon use and optionally create a transparent synonymous reference redesign.

Open Codon Usage & Optimization Analyzer

Multiple Sequence Alignment & Conservation

Align three or more DNA, RNA or protein sequences with Clustal Omega and inspect conservation and pairwise identity.

Open Multiple Sequence Alignment