Bioinformatics · Phase 33
Junctional Peptide Analyzer
Enumerate peptide windows that cross epitope/linker or linker/epitope boundaries in a multi-epitope construct. The output is designed for downstream MHC/HLA binding analysis of sequences created by the assembly itself.
Construct architecture
Epitope sequences
Optional N-terminal module
Optional C-terminal module
Load sample Enumerate junction peptides
Ready for analysis.
Interpretation all windows cross at least one construct boundary class labels refer only to selected peptide-length ranges duplicate junction sequences are collapsed in the summary each unique sequence retains occurrence count FASTA output is ready for downstream MHC/HLA analysis Not an MHC predictor. Junction-spanning sequences may or may not be generated, presented, recognized or immunogenic.
Unique junction-spanning peptides Category Length Sequence Occurrences Example junction
FASTA for downstream MHC/HLA analysis