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🧬 Molecular Design Platform v2.4

Stripe Checkout test integration, subscriptions, projects, PCR and RT-qPCR workflows

Dashboard

Standard PCR

Primer3 design, structural QC, local specificity and NCBI BLAST pre-screen.

RT-qPCR

Exon-aware ranking, gDNA-risk estimate, hydrolysis probe candidates and BLAST pre-screen.

Project Manager

Save multiple projects and keep a local design history.

Current project

No project loaded.

Design Assay

1. Target selection

2. Application and sequence

No transcript selected yet.

3. Design parameters

Peptide Analysis

Physicochemical analysis of peptide and protein sequences

1. Peptide / Protein sequence

2. Analysis results

Enter a sequence and click Analyze peptide.

3. Peptide Design

Enter a protein sequence above and click Design peptides.

MHC / HLA Binding Prediction

4. MHC / HLA Binding Prediction

Prioritize peptide candidates by predicted MHC/HLA binding. Binding prediction does not guarantee antigen presentation or immunogenicity.

Select species, MHC class, and allele/strain to begin.

Projects

Saved projects

Design history

Open a project to view history.

Account

Create account

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Current session

Not signed in.

Plans & Usage

Free

10 designs / month
3 BLAST checks / month
5 PDF reports / month

Suitable for testing the platform.

Pro

500 designs / month
200 BLAST checks / month
500 PDF reports / month

Checkout uses Stripe when test credentials are configured. Live Stripe keys are blocked unless explicitly enabled.

This month's usage

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Subscription

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About this prototype

This is a research prototype for molecular assay design. It combines Primer3, NCBI transcript retrieval, exon-aware RT-qPCR ranking, hydrolysis-probe suggestions, local background screening, NCBI BLAST pre-screening, project history and PDF reports.

Important: the prototype quality score is not a validated clinical metric. Specificity pre-screens do not replace full Primer-BLAST or wet-lab validation. RT-qPCR exon-aware assessment depends on available transcript annotation. Probe design is sequence-level only.